------- SECIS element -- id:1 -- grade:A ---- Chromosome = CM007939.1:subseq_57502243,94985_ Strand = - Positions = 38843 - 38767 Found by: Infernal (score=29.31) Covels (score=36.0) Stem2 length = 8 Apical loop length = 20 Insertion in stem2 = 0, 0 Free Energy = -11.07 ..(((((((.......(((((((((((((((................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ...({({((.......{[[{{((((((((....................))))))))}}]]}..--....))})})... target CCAUUCCCCAGACCAGUGACAGUCUGUCCGCAAACCAGCCUGGCUGGUAGGACAGACCUGAUGA--AAACGGCGUGCAA **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = CM007939.1:subseq_57502243,94985_ Strand = - Positions = 17570 - 17480 Found by: Infernal (score=11.94) Stem2 length = 11 Apical loop length = 21 Insertion in stem2 = 0, 0 Free Energy = -10.67 ..(((((((...............(((((((((((((((.......................)))))))))))))))........))))))).. model uucggucaugcg--------UuaAUGAcGgccuggcccuAAAcC--------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ....((((((..............{[[{(((((({(((((.....................)))))}))))))}]]}..--..-)))))).... target GCGCGAGAGUCUACACAUUCUGGGUGACGUGAUACCCUGCAUCUCACUGACUUUUUCUCAGGCGGGCUAUUGCUGAUCA--UC-GUUCUCAAUU **** ****